Publications & preprints


Markello RD, Hansen JY, Liu Z-Q, Bazinet V, Shafiei G, Suarez LE, Blostein N, Seidlitz J, Baillet S, Satterthwaite TD, Chakravarty MM, Raznahan A, & Misic B. Neuromaps: structural and functional interpretation of brain maps. Biorxiv. doi:10.1101/2022.01.06.475081. (Code and data; neuromaps toolbox)

Arnatkevic̆iūtė A, Markello RD, Fulcher BD, Misic B, & Fornito A. (2022). Towards best practices for imaging transcriptomics. OSF Preprints. doi:10.31219/

Vogel JW, Alexander-Bloch AF, Wagstyl K, Bertolero M, Markello RD, Pines A, Sydnor VJ, Diaz-Papkovich A, Hansen JY, Evans AC, Bernhardt B, Misic, B, Satterthwaite T, & Seidlitz J. (2022). Conserved whole-brain spatiomolecular gradients shape adult brain functional organization. Biorxiv. doi:10.1101/2022.09.18.508425.

Gale DJ, Areshenkoff CN, Standage DP, Nashed JY, Markello RD, Flanagan JR, Smallwood J, & Gallivan JP. (2022). Distinct patterns of cortical manifold expansion and contraction underlie human sensorimotor adaptation. Biorxiv. doi:10.1101/2022.06.09.495516.

Abbasi N, Tremblay C, Rajimehr R, Yu E, Markello RD, Shafiei G, Khatibi N, Jahanshad N, Thompson PM, Gan-or Z, Misic B, & Dagher A. (2022). Neuroanatomical correlates of polygenic risk for Parkinson Disease. Medrxiv. doi:10.1101/2022.01.17.22269262.

Blostein N, Devenyi GA, Patel S, Patel R, Tullo S, Plitman E, Costantino M, Markello RD, Parent O, Bedford SA, Sherwood CC, Hopkins WD, Seidlitz J, Raznahan A, & Chakravarty MM. (2022). Variation in subcortical anatomy: relating interspecies differences, heritability, and brain-behavior relationships. Biorxiv. doi:10.1101/2022.04.11.487874.

Bethlehem RAI, Seidlitz J, White SR, Vogel JW, Anderson KM, …, Markello RD, …, Bullmore ET, & Alexander-Bloch AF. (2022). Brain charts for the human lifespan. Nature, 604(7906), 525-33. doi:10.1038/s41586-022-04554-y.

Dukart J, Markello RD, Raine A, Eickhoff SB, Poeppl TB. (20212). Aberrant brain activity in individuals with psychopathy links to receptor distribution, gene expression, and behavior. Biological Psychiatry, 91(12), e45-47. doi:10.1016/j.biopsych.2021.08.025.


Markello RD, Arnatkevic̆iūtė A, Poline J-B, Fulcher BD, Fornito A, & Misic B. (2021). Standardizing workflows in imaging transcriptomics with the abagen toolbox. Elife, 10, e72129. doi:10.7554/eLife.72129. (Code and data; abagen toolbox)

Markello RD & Misic B (2021). Comparing spatial null models for brain maps. NeuroImage, 118052. doi:10.1016/j.neuroimage.2021.118052. (Code and data)

Markello RD, Shafiei G, Tremblay C, Postuma RB, Dagher A, & Misic B (2021). Multimodal phenotypic axes of Parkinson’s disease. NPJ Parkinson’s disease, 7(1), 1-12. doi:10.1101/2020.03.05.979526. (Code and data)

Hansen J, Markello RD, Vogel JW, Seidlitz J, Bzdok D, & Misic B (2021). Mapping gene transcription and neurocognition across human neocortex. Nature Human Behavior, 1-11. doi:10.1038/s41562-021-01082-z. (Code and data)

Hansen JY, Markello RD, Tuominen L, Nørgaard M, Kuzmin E, Palomero-Gallagher N, Dagher A, & Misic B. (2021). Correspondence between gene expression and neurotransmitter receptor and transporter density in the human brain. Biorxiv. doi:10.1101/2021.11.30.469876. (Code and data)

Hansen JY, Shafiei G, Markello RD, Smart K, Cox SML, Nørgaard M, Beliveau V, Wu Y, Gallezot J-D, Aumont E, Servaes S, Scala SG, DuBois JM, Wainstein G, Bezgin G, Funck T, Schmitz TW, Spreng RN, Galovic M, Koepp MJ, Duncan JS, Coles JP, Fryer TD, Aighbirhio FI, McGinnity CJ, Hammers A, Soucy J-P, Baillet S, Guimond S, Hietala J, Bédard M-A, Leyton M, KObayashi E, Rosa-Neto P, Ganz M, Knudsen GM, Palomero-Gallagher N, Shine JM, Carson RE, Tuominen L, Dagher A, & Misic B. (2021). Mapping neurotransmitter systems to the structural and functional organization of the human neocortex. Biorxiv. doi:10.1101/2021.10.28.466336. (Code and data)

DuPre E, Salo T, Ahmed Z, Bandettini PA, Bottenhorn KL, Caballero-Gaudes C, Dowdle LT, Gonzalez-Castillo J, Heunis S, Kundu P, Laird AR, Markello RD, Markiewicz CJ, Moia S, Staden I, Teves JB, Uruñuela E, Vaziri-Pashkam M, Whitaker K, Handwerker DA. (2021). TE-dependent analysis of multi-echo fMRI with tedana. Journal of Open Source Software, 6(66), 3669. doi:10.21105/joss.03669. (tedana toolbox)

Tremblay C, Rahayel S, Vo A, Morys F, Shafiei G, Markello RD, Gan-Or Z, Misic B, & Dagher A (2021). Brain atrophy progression in Parkinson’s disease is shaped by connectivity and local vulnerability. Brain Communications, 3(4), fcab269. doi:10.1093/braincomms/fcab269.

Costantino M, Bussy A, Pigeau G, Blostein N, Devenyi GA, Markello RD, Patel R, Gervais N, Chakravarty MM. (2021). Sex differences in cortical morphometry during ageing: Examining the interplay between lifestyle and reproductive factors. Biorxiv. doi:10.1101/2021.10.14.464259 .


Shafiei G, Markello RD, Vos de Wael R, Bernhardt BC, Fulcher BD, & Misic B (2020). Topographic gradients of intrinsic dynamics across neocortex. Elife, 9, e6211. doi:10.7554/eLife.62116.

Suárez LE, Markello RD, Betzel RF, & Misic B (2020). Linking structure and function in macroscale brain networks. Trends in Cognitive Sciences, 24(4), 302-315. doi:10.1016/j.tics.2020.01.008.

Shafiei G, Markello RD Makowski C, Talpalaru A, Kirschner M, Devenyi GA, Guma E, Hagmann P, Cashman NR, Lepage M, Chakravarty MM, Dagher A, & Misic B (2020). Spatial patterning of tissue volume loss in schizophrenia reflects brain network architecture. Biological Psychiatry, 87(8), 727-735. doi:10.1016/j.biopsych/2019.09.031.

Kirschner M, Shafiei G, Markello RD, Makowski C, Talpalaru A, Hodzic-Santor B, Devenyi G, Paquola C, Bernhardt B, Lepage M, Chakravarty MM, Dagher A, & Misic B (2020). Latent clinical-anatomical dimensions of schizophrenia. Schizophrenia Bulletin, 46(6), 1426-1438. doi:10.1093/schbul/sbaa097.


Vázquez-Rodríguez B, Suárez LE, Markello, RD, Shafiei G, Paquola C, Hagmann P, van den Heuvel MP, Bernhardt BC, Spreng RN, & Misic B (2019). Gradients of structure–function tethering across neocortex. Proceedings of the National Academy of Sciences, 116(42), 21219-21227. doi:10.1073/pnas.1903403116. (Code and data)

Notter M, Gale D, Herholz P, Markello RD, Notter-Bielser ML, & Whitaker K (2019). AtlasReader: A Python package to generate coordinate tables, region labels, and informative figures from statistical MRI images. Journal of Open Source Software, 4(34), 1257. doi:10.21105/joss.01257. (Code)


Markello RD, Spreng RN, Luh WM, Anderson AK, & De Rosa E (2018). Segregation of the human basal forebrain using resting state functional MRI. NeuroImage, 173, 287-297. doi:10.1016/j.neuroimage.2018.02.042.

Authors contributed equally to this work.